Modeling of intravenous caspofungin administration using an intestine-on-chip reveals altered Candida albicans microcolonies and pathogenicity

Tim Kaden, Raquel Alonso-Román, Parastoo Akbarimoghaddam, Alexander S. Mosig, Katja Graf, Martin Raasch, Bianca Hoffmann, Marc T. Figge, Bernhard Hube, Mark S. Gresnigt

1_0.25caspo_x10_dapi_647_1.tif 2 GB 1_0.25caspo_x10_dapi_647_2.tif 2 GB 1_0.25caspo_x10_dapi_647_3.tif 2 GB 1_0.25caspo_x10_dapi_647_4.tif 2 GB 1_0.25caspo_x10_dapi_647_5.tif 2 GB 1_0.25caspo_x10_dapi_647_6.tif 1 GB 1_0caspo_x10_dapi_488_647_1.tif 1 GB 1_0caspo_x10_dapi_647_2.tif 1 GB 1_0caspo_x10_dapi_647_3.tif 2 GB 1_0caspo_x10_dapi_647_4.tif 2 GB 1_0caspo_x10_dapi_647_5.tif 2 GB 1_1caspo_x10_dapi_647_1.tif 1 GB 1_1caspo_x10_dapi_647_2.tif 1 GB 1_1caspo_x10_dapi_647_3.tif 1 GB 1_1caspo_x10_dapi_647_4.tif 2 GB 1_1caspo_x10_dapi_647_5.tif 2 GB 1_4caspo_x10_dapi_647_1.tif 1 GB 1_4caspo_x10_dapi_647_2_1.tif 1 GB 1_4caspo_x10_dapi_647_3.tif 1 GB 1_4caspo_x10_dapi_647_4.tif 1 GB 1_4caspo_x10_dapi_647_5.tif 1 GB 2_0.25caspo_x10_dapi_647_1.tif 2 GB 2_0.25caspo_x10_dapi_647_2.tif 2 GB 2_0.25caspo_x10_dapi_647_3.tif 2 GB 2_0.25caspo_x10_dapi_647_4.tif 2 GB 2_0.25caspo_x10_dapi_647_5.tif 2 GB 2_0caspo_x10_dapi_647_1.tif 1 GB 2_0caspo_x10_dapi_647_2.tif 2 GB 2_0caspo_x10_dapi_647_3.tif 2 GB 2_0caspo_x10_dapi_647_4.tif 2 GB 2_0caspo_x10_dapi_647_5.tif 1 GB 2_1caspo_x10_dapi_647_1.tif 1 GB 2_1caspo_x10_dapi_647_2.tif 2 GB 2_1caspo_x10_dapi_647_3.tif 1 GB 2_1caspo_x10_dapi_647_4.tif 1 GB 2_1caspo_x10_dapi_647_5.tif 2 GB 2_1caspo_x10_dapi_647_6.tif 1 GB 2_4caspo_x10_dapi_647_1.tif 2 GB 2_4caspo_x10_dapi_647_2.tif 2 GB 2_4caspo_x10_dapi_647_3.tif 2 GB 2_4caspo_x10_dapi_647_4.tif 2 GB 2_4caspo_x10_dapi_647_5.tif 2 GB 3_0.25caspo_x10_dapi_647_1.tif 2 GB 3_0.25caspo_x10_dapi_647_2.tif 2 GB 3_0.25caspo_x10_dapi_647_3.tif 2 GB 3_0.25caspo_x10_dapi_647_4.tif 2 GB 3_0.25caspo_x10_dapi_647_5.tif 1 GB 3_0caspo_x10_dapi_488_647_1.tif 2 GB 3_0caspo_x10_dapi_647_2.tif 2 GB 3_0caspo_x10_dapi_647_3.tif 2 GB 3_0caspo_x10_dapi_647_4.tif 1 GB 3_0caspo_x10_dapi_647_5.tif 1 GB 3_1caspo_x10_dapi_647_1.tif 2 GB 3_1caspo_x10_dapi_647_2.tif 2 GB 3_1caspo_x10_dapi_647_3.tif 2 GB 3_1caspo_x10_dapi_647_4.tif 2 GB 3_1caspo_x10_dapi_647_5.tif 2 GB 3_4caspo_x10_dapi_647_1.tif 2 GB 3_4caspo_x10_dapi_647_2.tif 2 GB 3_4caspo_x10_dapi_647_3.tif 2 GB 3_4caspo_x10_dapi_647_4.tif 2 GB 3_4caspo_x10_dapi_647_5.tif 2 GB

This folder contains the data and image analysis codes required to reproduce our findings. More information on how to run the analysis, can be found in Readme.txt!


Contents

Data: The raw microbiological and biomolecular data and the preprocessed images using the software Huygens Professional

Codes: The image analysis scripts used for generating the results

Example: Example of image analysis steps

Quantifications: Quantifications derived from the images

Readme.txt: More information on data and codes